But whether they are allowed to represent Russia or not is unclear.
IOC president Thomas Bach said clean Russian athletes should take part under their own flag.
While athletics' governing body the IAAF says it will accept appeals on an "exceptional basis", for Russians to participate as "neutral athletes".
On Friday, the IAAF upheld a ban on all Russian track and field athletes competing at this summer's Olympic Games on Friday, first imposed because of widespread state-sponsored doping and cover-up allegations.
On Tuesday, the IOC opened the door for some athletes to go to this summer's Olympic Games, if they could prove they were clean, with Bach saying: "If there are athletes qualified, then they will compete as members of the team of the Russian Olympic Committee."
However, the IAAF responded by insisting that if athletes met "strict criteria", they would compete "in an individual capacity as neutral athletes, not under any country's flag".
It added: "This decision has been unequivocally supported across sport and the IOC summit today unanimously agreed to fully respect the IAAF decision."
The president of the Russian Olympic Committee, Alexander Zhukov, confirmed Russia's clean athletes would appeal to the Court of Arbitration for Sport (Cas) against the "legally indefensible" ban on them competing.
He added that Russia "will not boycott the Olympics".
A statement from the Russian Ministry for Sport said its athletes would undergo at least three additional IAAF anti-doping tests before Rio, adding: "Our Olympians are ready to go over and above all the normal anti-doping tests to show their commitment to clean and fair sport."
However, sports minister Vitaly Mutko later said the IAAF had "done everything to destroy" athletics in his country.
The IOC met in Lausanne on Tuesday to agree a five-point anti-doping plan, saying the "presumption of innocence of athletes" from Russian and Kenyan athletes was "being put seriously into question".